Welcome to PubMLST. This site hosts publicly accessible Multilocus Sequence Typing (MLST) databases and software. We provide means of accessing these databases in common formats suitable for easy linking and importation to local resources.

• MLST allelic profiles and allele sequences from publicly accessible databases
• Software
• Data analysis - web based tools
• Databases hosted on PubMLST
  - Bacterial MLST+ Bacterial MLST
  • Acinetobacter baumannii
  • Bacillus cereus
  • Bordetella spp.
  • Brachyspira spp.
  • Burkholderia cepacia complex
  • Campylobacter fetus
  • Campylobacter helveticus
  • Campylobacter insulaenigrae
  • Campylobacter jejuni and Campylobacter coli
  • Campylobacter lari
  • Campylobacter upsaliensis
  • Helicobacter pylori

  • Klebsiella pneumoniae
  • Listeria monocytogenes
  • Neisseria spp.
  • Porphyromonas gingivalis
  • Pseudomonas aeruginosa
  • Streptococcus agalactiae
  • Streptococcus uberis
  • Streptococcus zooepidemicus
  • Streptomyces spp.
  • Vibrio parahaemolyticus
  • Vibrio vulnificus
  • Wolbachia spp.
• - Eukaryote MLST+ Eukaryote MLST
  • Aspergillus fumigatus
  • Candida krusei

  • Candida tropicalis
• - Other databases+ Other databases
  • Borrelia burgdorferi MLSA

  • Plasmid MLST
• All species MLST databases (local and externally hosted) and published schemes
• Recent publications that use or mention MLST
• News and updates
• International mirrors of this site: Primary | UK1 | UK2 | US1

Please contact us if you would like us to host or help develop a MLST database for a particular organism, or have a request for new functionality.

The primary PubMLST site is hosted at The Peter Medawar Building for Pathogen Research, University of Oxford, UK.  The site is developed and maintained by Keith Jolley. Web standards validation - Valid: XHTML | CSS