getIsolate

Description: Returns isolate record.

Arguments

• database (string)
• id (integer)

Sample Perl code

#!/usr/bin/perl
#Written by Keith Jolley

use SOAP::Lite;
use strict;
use warnings;

#####Sample arguments#########
my $database = 'neisseria';
my $id = 100;
##############################

my $soap = SOAP::Lite
    -> uri('http://pubmlst.org/MLST')
    -> proxy('http://pubmlst.org/cgi-bin/mlstdbnet/mlstFetch.pl');
my $soapResponse = $soap->getIsolate($database,$id);
unless ($soapResponse->fault){
    for my $soapData ($soapResponse->dataof('//field')) {
	print $soapData->value->{'name'} . ": " .
	    $soapData->value->{'value'} . "\n";
    }
} else {
    print join ', ',$soapResponse->faultcode,$soapResponse->faultstring;
}

Sample Java code

package org.pubmlst.mlstSOAP;

import org.apache.axis.client.Call;
import org.apache.axis.client.Service;
import javax.xml.namespace.QName;

import java.util.Vector;

public class GetIsolate {

    public static void main(String[] args) {
	//Sample arguments////////////////
	String database = "neisseria";
	int id = 100;
	//////////////////////////////////
	try {
	    String endpoint = "http://pubmlst.org/cgi-bin/mlstdbnet/mlstFetch.pl";
	    Service service = new Service();
	    Call call = (Call) service.createCall();
	    call.setTargetEndpointAddress(new java.net.URL(endpoint));
	    call.setOperationName(new QName("http://pubmlst.org/MLST/",
					    "getIsolate"));
	    call.addParameter("database",org.apache.axis.Constants.XSD_STRING,
			      javax.xml.rpc.ParameterMode.IN);
	    call.addParameter("id",org.apache.axis.Constants.XSD_INT,
			      javax.xml.rpc.ParameterMode.IN);
	    call.setReturnType(org.apache.axis.Constants.SOAP_VECTOR);
	    Vector ret = (Vector) call.invoke(new Object[] { database,id });
	    for (int i=0; i<ret.size(); i++){
		Vector field = (Vector)ret.get(i);
		System.out.println(field.get(0) + ": " +
				   field.get(1));
	    }
	} catch (Exception e) {
	    System.err.println(e.toString());
	}
    }
}

Output

id: 100
strain: 638
ST: 11
country: USA
year: 1994
disease: invasive (unspecified/other)
epidemiology: sporadic case
species: Neisseria meningitidis
serogroup: C
MLEE_designation: ET-37 Complex
ET_no: 24
reference1: 11136752
sender: 10
curator: 2
date_entered: 2001-03-02
datestamp: 2001-03-02
abcZ: 2
adk_: 3
aroE: 4
fumC: 3
gdh_: 8
pdhC: 4
pgm_: 6
clonal_complex: ST-11 complex/ET-37 complex