Chlamydiales MLST Databases

This MLST scheme uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

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This MLST scheme was developed by Yvonne Pannekoek, Arie van der Ende and colleagues, Academic Medical Center, Amsterdam, The Netherlands.

Website and database managed by Keith Jolley, curated by Yvonne Pannekoek.

The use of this database is subject to the terms of the policy document and it should be acknowledged in all publications that make use of it. The preferred format for the acknowledgement can be found in the right-hand sidebar.

The primary Chlamydiales MLST website is hosted at the Department of Zoology, University of Oxford, UK.

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A. baumannii
Aeromonas
Arcobacter
B. cepacia
B. cereus
B. hyodysenteriae
B. intermedia
Bordetella
Brachyspira
C. difficile
C. diphtheriae
C. helveticus
C. insulaenigrae
C. jejuni
C. krusei
C. lari
C. upsaliensis
Cronobacter
H. parasuis
H. pylori
M. agalactiae
M. haemolytica
Neisseria
P. acnes
P. aeruginosa
P. multocida (RIRDC)
S. agalactiae
S. oralis
S. zooepidemicus
V. parahaemolyticus
V. vulnificus
Wolbachia
X. fastidiosa
Y. ruckeri
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Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Chlamydiales MLST website (http://pubmlst.org/ chlamydiales/) developed by Keith Jolley and sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 130
Profiles (MLST): 46
Last updated: 2010-04-14

Isolate database
Isolates: 133
Last updated: 2010-10-19