Streptococcus oralis MLST primers and PCR conditions

Primers

GenePrimer nameSequence
Shikimate dehydrogenasearoE-F5'-GCCTTTGAGGCGACAGC-3'
aroE-R5'-TGCAGTTCA(G/A)AAACAT(A/T)TTCTAA-3'
D-alanine-D-alanine ligaseddl-F5'-TGC(C/T)CAAGTTCCTTATGTGG-3'
ddl-R5'-CACTGGGT(G/A)AAACC(A/T)GGCAT-3'
Glucose-6 phosphate dehydrogenasegdh-F5'-ATGGACAAACCAGC(G/A/T/C)AG(C/T)TT-3'
gdh-R5'-GCTTGAGGTCCCAT(G/A)CT(G/A/T/C)CC-3'
Glucokinasegki-F5'-GGCATTGGAATGGGATCACC-3'
gki-R5'-TCTCCCGCAGCTGACAC-3'
Mismatch repair proteinhexB-F5'-ACCTATCTCTTTGCCCAG-3'
hexB-R5'-CCTGAATACGTCGGAACATCTTT-3'
TransketolaserecP-F5'-GCCAACTCAGGTCATCCAGG-3'
recP-R5'- TGCAACCGTAGCATTGTAAC-3'
Xanthine phosphoribosyltransferasexpt-F5'-TTATTAGAAGAGCGCATCCT-3'
xpt-R5'-AGATCTGCCTCCTTAAATAC-3'

Thermocycling conditions for PCR

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Citing the database

The preferred format for citing this website in publications is:

This publication made use of the oral Streptococcus MLST website (http://pubmlst.org/ soralis/) developed by Keith Jolley and sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 704
Profiles:
S. mutans MLST (Do): 122
S. mutans MLST (Nakano): 142
S. oralis MLST: 77

Isolate database
Isolates: 252
Last updated: 2010-06-10