BIGSdb administrator's guide
Most database configuration, such as defining new loci or schemes can be done through the web interface, as described below. Configuration settings that affect the database structure, such as setting isolate provenance or sample management fields, or authentication mechanisms, are defined in the XML configuration file for each database. See the installation and configuration guide for details of these.
Sequence definition databases
Isolate databases
- Adding new loci
- Genome filtering
- Setting locus genome positions
- Defining schemes
- Defining composite fields
- Querying by extended attributes - ontologies
- Checking external database configuration settings