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Streptomyces MLST Databases

This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.

This MLST scheme was developed by Yinping Guo and Ying Huang (State Key Laboratory of Microbial Resources, Institute of Microbiology, CAS, China). The project was funded by NSFC grant number 30670002 - Molecular systematics of Streptomyces.

Database curated by Ying Huang.

Citing the database

The preferred format for citing this website in publications is:

This publication made use of the Streptomyces MLST website (http://pubmlst.org/ streptomyces/) developed by Keith Jolley and sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.

Status

Sequence database
Sequences: 1082
Profiles (MLST): 234
Last updated: 2016-01-22

Isolate database
Isolates: 270
Last updated: 2016-01-22